apt-get Install samtools

How do you install samtools in Linux using apt-get command?

How to Install samtools with apt-get?

apt-get install samtools -y

Install Samtools  Command

Here is a tutorial to learn how to install samtools using apt-get command.

Step 1: Open terminal with su access and enter the command as shown below:
apt-get install samtools -y

Step 2: After completion, the install command exits and instructs the user to restart the running instances of samtools if it is running already.

Result of the Command Execution shown below:

root@hiox:~ apt-get install samtools -y
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
samba ldb tools x11 apps libusbip0 libmono data tds2.0 cil libsmbclient
libplist1 libxcb aux0 libxfce4menu 0.1 0 libsm dev libatk1.0 0 python gnome2
echoping menu libts 0.0 0 syslinux libtalloc2 openssh server
libpackagekit qt 12 libical0 python3 minimal libwpd8c2a libcommons pool java
libcdio10 libgtk2.0 common libopencryptoki0 dnsmasq base libtwolame0
libmono security2.0 cil libnet ssleay perl libgsf 1 common
update notifier common libqca2 iputils tracepath xfonts 75dpi libzbar0
python pyorbit libmtp8 gedit common xsltproc libgutenprint2
libsilcclient 1.1 3 libxcb atom1 erlang crypto libecj java
xserver xorg video all python debian libxml sax perl libxcomposite1
libice dev lp solve libgail18 libarchive1 xserver xorg video apm libntfs10
libaiksaurus 1.2 data realpath libpth20 libdigest sha1 perl
xserver xorg video ark fakeroot xserver xorg video ati sensible mda
unattended upgrades libxrandr dev authbind libgmime 2.4 2 libv4l 0
libcupsppdc1 ttf dejavu extra telepathy gabble libgnome2 vfs perl
libhal storage1 libmono system2.0 cil xfonts scalable libcdio paranoia0
libgnome2 0 libcompizconfig0 libwebkit 1.0 common squashfs tools
update notifier gamin libgphoto2 port0 unetbootin translations debhelper
usbmuxd libxdamage dev libxml sax expat perl pkg config libxklavier16
libxxf86dga1 libnet dbus perl libxine1 x libcupscgi1 libcaca0
libfile copy recursive perl libmeanwhile1 libgudev 1.0 0 libgnomecanvas2 0
xserver xorg video openchrome erlang xmerl intel gpu tools xbase clients
speedy cgi perl libmono sqlite2.0 cil libpthread stubs0 snort rules default
libavc1394 0 esound clients libbonobo2 common libcupsdriver1
libfile homedir perl libotf0 libatk1.0 data libsgutils2 2 libprotobuf5
gnome mime data libcanberra pulse libmodplug0c2 python pycurl squid3 common
libxml parser perl link grammar dictionaries en obexd client x11 utils
libmagickcore2 liburi perl libpangomm 1.4 1 upower libsox fmt base libotr2
libtie ixhash perl xserver xorg video s3virge libots0 desktop file utils
xserver xorg video v4l dnsutils libspectre1 x11 xkb utils libgnomeui 0
libcairo perl xserver xorg video mga gvfs backends libxnee0 libsvga1
obex data server libgtk2 perl libhtml parser perl libparted0debian1
xserver xorg video chips libecal1.2 7 libbeagle1 libmono corlib2.0 cil
libsane libxfixes dev udisks libimobiledevice0 libgtkmm 2.4 1c2a g++ 4.4
odbcinst1debian1 update inetd libqt4 test libvarnish1 libgtk2 imageview perl
icedtea netx transmission cli libhyphen0 erlang syntax tools
xserver xorg core liblouis data xserver xorg video mach64 libxfconf 0 2
libibus1 ttf dustin libzend framework php libproxy0 libjpeg progs libpst4
xterm libnspr4 dev libxcb render util0 dev libboost program options1.40.0
libnm util1 gnome menus kdelibs5 xserver common snort common libraries
libtagc0 libxcb xv0 libgl1 mesa dri libsox fmt alsa python newt libbonobo2 0
libmagickwand2 libvte common aumix common libsctp1 libfile which perl
language pack zh hant base libgnomevfs2 common hpijs
xserver xorg video trident docbook xml libgupnp 1.0 3 libgmp3 dev
libglademm 2.4 1c2a libexo common nvidia current modaliases
libgnomevfs2 extra python software properties cups client squid common
x11proto xinerama dev libgl1 mesa glx mobile broadband provider info
libncurses5 dev xserver xorg video sis libpcap0.8 libx86 1 libfont afm perl
abiword common x11proto render dev oxygen icon theme libpisock9 libxi dev
xmms2 plugin pulse libx11 protocol perl m4 gconf2 java common dosfstools
libgdata google1.2 1 libmono i18n west2.0 cil xauth lksctp tools
guile 1.8 libs libwps 0.1 1 libwbclient0 rpm common librrd4 po debconf
aptitude xfdesktop4 data libgomp1 icedtea 6 jre cacao scala library
libxml namespacesupport perl libedata cal1.2 6 notification daemon
libxnconfig9.0.5 python gnomecanvas wireshark common libpixman 1 dev
libnspr4 0d libsqlite0 libslp1 libucl1 whois trousers libdotconf1.0
xserver xorg video siliconmotion libtimedate perl xdg user dirs
default jre headless libnotify1 libcairo2 libstartup notification0
libtpm unseal0 openoffice.org style human libgoffice 0.8 8 common
xserver xorg input vmmouse libavahi glib1 gnome keyring fortune mod
evolution common xfce keyboard shortcuts libmono posix2.0 cil
libcouchdb glib 1.0 2 odbcinst znc tcl python samba g++ mono runtime
libvisual 0.4 0 telepathy salut libsigc++ 2.0 0c2a xserver xorg video savage
libfile desktopentry perl mtools libcwidget3 pidgin data libcanberra0
intltool debian libproc simple perl openjdk 6 jre lib libsdl1.2debian alsa
tcl8.4 dev libvde0 libhttp server simple perl libthai data python3.1 dcraw
libnss3 dev libgadu3 xorg docs core x11proto kb dev x11proto randr dev
libwavpack1 libqt4 opengl libsoup gnome2.4 1 libpsiconv6 libxinerama dev
libcap2 bin xserver xorg video tdfx network manager pptp pptp linux
libgtkhtml editor common gcc 4.4 avahi utils x11 session utils m17n db
libpango perl cpu checker python ldb libglitz glx1
compizconfig backend gconf libreadline6 dev librrds perl freetds common
transmission common libglibmm 2.4 1c2a libxosd2 libobparser21 libgamin0
libcommons collections java snort common apache2 libdirectfb 1.2 0
update manager erlang runtime tools libhtml tree perl librsvg2 common
procmail update manager core libsvn1 openjdk 6 jre headless xtrans dev
python gmenu libindicate4 libwnck22 libakonadiprivate1 libtspi1
libdevkit power gobject1 python webkit libsexy2 gstreamer0.10 gnonlin
libx264 85 libxcb event1 xserver xorg video intel libmcrypt4 libindicator0
samba common librecode0 libffi5 libiec61883 0 libforms1 libvlc2 libxres1
xserver xorg input all libmailtools perl libcairomm 1.0 1 libgdata common
python aptdaemon liblink grammar4 libgnome mag2 gettext libqt4 help xbitmaps
libpango1.0 common x11proto input dev samba4 common bin python glade2
xmms2 plugin id3v2 libgp11 0 libgnome2 gconf perl cups common uno libs3
xserver xorg video vmware samba doc libgcr0 launchpad integration
libpixman 1 0 python tdb libsdl1.2debian libexempi3 libhpmud0
x11proto fixes dev libxml simple perl libijs 0.35 xserver xorg video r128
xubuntu wallpapers aumix libwww mechanize perl gcc libgdu0 libgnome2 common
gdb libsilc 1.1 2 libhal1 cvs linux headers 2.6.32 74 xfonts base
python xapian apt xapian index hal xserver xorg input evdev
libdbusmenu glib1 libtomcat6 java libxinerama1 libgoocanvas common
binfmt support libesd0 python launchpad integration sendmail cf
libgtkimageview0 liblouis0 libept0 linux headers 2.6.32 74 generic tk8.4 dev
libmikmod2 libmono system data2.0 cil oss compat iputils arping
zend framework bin libedata book1.2 2 xserver xorg video vesa
libgconfmm 2.6 1c2 openssh client libreadline5 libgdome2 0 sudo
x11 xfs utils python xdg libsmi2ldbl libupnp3 libxft2 speech dispatcher
sendmail base libgnomevfs2 0 x11proto xext dev mono gac libcolamd2.7.1
python vte libnm glib2 libsnmp session perl libxt dev libconfig grammar perl
kdepimlibs data libvte9 libfile basedir perl xulrunner 1.9.2 libcroco3
modemmanager tzdata java libevent 1.4 2 gconf defaults service libxext dev
python cairo libdbusmenu gtk1 libpulse mainloop glib0 libegroupwise1.2 13
libcommons dbcp java libtevent0 erlang mnesia libgsf 1 114 libgtop2 common
libaa1 software properties gtk libopenobex1 rdesktop libieee1284 3
rarian compat znc perl x11proto damage dev libgnome2 canvas perl libthai0
libxcb keysyms1 linux headers generic rsync python dbus erlang public key
aptdaemon manpages libneon27 gnutls libxapian15 libglitz1
xserver xorg video s3 xserver xorg mono 2.0 gac libdjvulibre21 libglade2 0
libxine1 console policykit 1 gnome xserver xorg video nv libvorbisfile3
xfonts 100dpi libspeechd2 esound common xserver xorg video voodoo
xserver xorg video fbdev module assistant xserver xorg input wacom
lxmenu data xmms2 plugin alsa im switch python aptdaemon gtk ppp
libxfce4util common libservlet2.5 java libglib perl xdg utils xinit
libzzip 0 13 libjs cropper squid langpack libshout3
xserver xorg video nouveau libdv4 libhtml format perl libatasmart4
build essential libmono sharpzip2.84 cil libxau dev dpkg dev
xfce4 power manager data libxmmsclient6 thunar data python gnupginterface
libfs6 libgdata6 xserver xorg video neomagic fglrx modaliases
libtotem plparser17 libgnomecanvasmm 2.6 1c2a a2ps nvidia 96 modaliases
php5 mcrypt tcl8.4 tcl8.5 libqt4 assistant ure pinyin database sendmail bin
libplasma3 python gobject xserver xorg input mouse erlang inets
kernel package libgtop2 7 xmms2 core squid ntfsprogs libvisual 0.4 plugins
ttf dejavu libxine1 misc plugins python3 ttf arphic bsmi00lp libusbmuxd1
libappindicator0 yelp libgnome2 wnck perl libm17n 0 libdecoration0
liblircclient0 kdepimlibs5 libgnomeui common xz utils libxfce4util4 synaptic
libxxf86misc1 m17n contrib libwebkit 1.0 2 libgupnp igd 1.0 2 gksu
libgnome keyring0 libsocket6 perl psutils libsidplay1 kdelibs bin usbutils
smartdimmer libxvmc1 language pack zh hans base gnome desktop data
opencryptoki python3.1 minimal libc ares2 libc6 dev libldb0 apparmor
libupower glib1 libpackagekit glib2 12 tk8.4 tk8.5 liblua5.1 0 libanthy0
libxcomposite dev libtag1c2a libcamel1.2 14 librsvg2 2 libbonoboui2 0
tomcat6 common libgmpxx4ldbl libwnck common libxcb render0 dev
app install data libxrender dev xmms2 plugin vorbis libxfce4util bin
libxmmsclient glib1 libgksu2 0 sgml data media player info libmad0
libgnome2 perl libdb4.7 libxml xpath perl xorg libfile mimeinfo perl
ttf arphic gbsn00lp fortunes min bsd mailx xfonts mathml libgpgme11
libart 2.0 2 evolution data server common protobuf compiler
liblaunchpad integration1 pmount gstreamer0.10 tools ca certificates java
libopencore amrnb0 libcdio cdda0 imagemagick libhtml tagset perl vlc data
libzephyr4 gnome user guide xserver xorg video sisusb erlang ssl
libpango1.0 0 libgraphite3 libgvfscommon0 libmusicbrainz4c2a libx11 dev
libwpg 0.1 1 libaiksaurus 1.2 0c2a oinkmaster libtar hal info libqt3 mt
miscfiles libxdamage1 libprelude2 x11proto composite dev gvfs linux libc dev
libdesktopcouch glib 1.0 2 openoffice.org common patch manpages dev xvfb
samba common bin libgnome menu2 language pack zh hans language pack zh hant
libwww perl xserver xorg video tseng xserver xorg video radeon
common lisp controller libxcb render0 vzquota libebackend1.2 0 xfconf
scrollkeeper info dvd+rw tools libexif12 libgtk2.0 bin libqt4 scripttools
libglu1 mesa libdjvulibre text libavahi gobject0 libsox1a libcupsmime1
libc dev bin libnet libidn perl libnice0 compiz core libxcb1 dev
libxcb shape0 libvala0 xserver xorg video cirrus gstreamer0.10 nice
libmail sendmail perl cl asdf libbonoboui2 common libloudmouth1 0 libssh 4
perlmagick libxcb shm0 libvlccore2 binutils kdebase runtime data min12xxw
libevtlog0 libxv1 znc extra libio socket ssl perl libjson glib 1.0 0
apport gtk libxmlrpc core c3 nvidia 173 modaliases p7zip full mscompress
openjdk 6 jre libossp uuid16 libprotoc5 libsys hostname long perl libmpcdec3
libpam gnome keyring libgdata1.2 1 libxcb render util0 libopencore amrwb0
openbsd inetd bcmwl modaliases gnome icon theme xmms2 icon
indicator application libnet1 libnss3 1d gstreamer0.10 plugins base
x11proto core dev python gtk2 xmms2 client cli python gconf keyutils
adium theme ubuntu xserver xorg input synaptics libxml twig perl
libdigest hmac perl libgssdp 1.0 2 xmms2 client nycli gnome doc utils
libgtk2.0 0 regina3 dvb apps libxine1 bin libxdmcp dev
xserver xorg video rendition libpthread stubs0 dev libsysfs dev
libxcursor dev python libxml2 libedataserver1.2 11 libxkbfile1
libgnomecanvas2 common xserver xorg video i128 telepathy mission control 5
notify osd icons libjs mootools libxine1 ffmpeg libpisync1 libvdeplug2
erlang base libsort naturally perl libsoup2.4 1 libio socket inet6 perl
libstdc++6 4.4 dev libgphoto2 2 wdiff libebook1.2 9 libgdome2 cpp smart0c2a
libgtksourceview2.0 common libtag1 vanilla libxine1 libaudiofile0 libsmpeg0
libreadline dev
Use 'apt-get autoremove' to remove them.
The following NEW packages will be installed:
samtools
0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded.
Need to get 437kB of archives.
After this operation, 774kB of additional disk space will be used.
Get:1 http://old releases.ubuntu.com/ubuntu/ lucid/universe samtools 0.1.7a~dfsg 1 [437kB]
Fetched 437kB in 1s (292kB/s)
Selecting previously deselected package samtools.
(Reading database ... (Reading database ... 5%(Reading database ... 10%(Reading database ... 15%(Reading database ... 20%(Reading database ... 25%(Reading database ... 30%(Reading database ... 35%(Reading database ... 40%(Reading database ... 45%(Reading database ... 50%(Reading database ... 55%(Reading database ... 60%(Reading database ... 65%(Reading database ... 70%(Reading database ... 75%(Reading database ... 80%(Reading database ... 85%(Reading database ... 90%(Reading database ... 95%(Reading database ... 100%(Reading database ... 204748 files and directories currently installed.)
Unpacking samtools (from .../samtools_0.1.7a~dfsg 1_amd64.deb) ...
Processing triggers for man db ...
Setting up samtools (0.1.7a~dfsg 1) ...
root@hiox:~


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